PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00000882-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 182aa    MW: 20683.9 Da    PI: 10.1275
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00000882-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.83.3e-071467454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC......TTS-.STCHHHHHHHHHHHHHH CS
                 HLH  4 ahnerErrRRdriNsafeeLrellPkas...kapskK.lsKaeiLekAveYIksL 54
                        + + +Er+RR +++   ++L +l+P +    k p++  +s  + L  A++YI +L
  WALNUT_00000882-RA 14 NRKTVERNRRIHMKGLCFKLASLIPDDLhyiK-PARNmVSQQDKLDYATRYITQL 67
                        56789*********************555954.55555**************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-91382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-101382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MKKTGSNHDA TKPNRKTVER NRRIHMKGLC FKLASLIPDD LHYIKPARNM VSQQDKLDYA  60
TRYITQLRER IEKLKRKKEQ VAVSLGTGSC NMIDDTGNGS WLPVVDLRDL GSSIEVILIS  120
GLQKNFMYEV TCILQEEGAE VVSGSFSTVG EKIFHTVHAK PKISRIGVET SRVWQRLQEL  180
KN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579413.15e-77PREDICTED: uncharacterized protein LOC8289025
TrEMBLB9RB435e-74B9RB43_RICCO; DNA binding protein, putative
STRINGPOPTR_0015s08580.13e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.17e-17bHLH family protein